Package index • geokit

All functions

show(<GEOData>) meta(<GEOData>) `meta<-`(<GEOData>) accession(<GEOData>) `accession<-`(<GEOData>) show(<GEOSoft>) columns(<GEOSoft>) `columns<-`(<GEOSoft>) datatable(<GEOSoft>) `datatable<-`(<GEOSoft>) show(<GEOSeries>) gsm(<GEOSeries>) `gsm<-`(<GEOSeries>) gpl(<GEOSeries>) `gpl<-`(<GEOSeries>): Virtual class for holding GEO series, samples, platforms, and datasets.

geo(): Retrieve GEO Objects from NCBI GEO

geo_gtype(): GEO accession type

geo_meta(): Get the metadata of multiple GEO identities

geo_search(): Search GEO database

geo_show(): Open the GEO landing page in a browser

geo_suppl(): Get Supplemental Files from GEO

geo_url(): GEO URL resolver

log_trans(): Apply log2 Transformation to Expression Data

parse_gsm_list(): Parse key-value pairs in GEO series soft file

parse_pdata(): Parse key-value pairs in GEO series matrix file