Build a matrix from phylo object — fortify_matrix.phylo • ggalign

This method allows a phylo object to be directly input into stack_discrete() or circle_discrete(). This makes it possible to add align_phylo() to the stack independently, as align_phylo() requires the layout to have labels.

Usage

# S3 method for class 'phylo'
fortify_matrix(data, ..., data_arg = caller_arg(data), call = NULL)

Arguments

data: A phylo object.
...: These dots are for future extensions and must be empty.
data_arg: The argument name for data. Developers can use it to improve messages. Not used by the user.
call: The execution environment where data and other arguments for the method are collected, e.g., caller_env(). Developers can use it to improve messages. Not used by the user.

Value

A one-column matrix where the tip labels are the values, and the row names will also be the tip labels.

See also

Other fortify_matrix methods: fortify_matrix.GISTIC(), fortify_matrix.MAF(), fortify_matrix.default(), fortify_matrix.list_upset(), fortify_matrix.matrix(), fortify_matrix.matrix_upset()