Arrange plots around a Heatmap

ggheatmap is an alias of layout_heatmap.

Usage

layout_heatmap(
  data,
  mapping = aes(),
  ...,
  filling = TRUE,
  set_context = TRUE,
  order = NULL,
  name = NULL
)

ggheatmap(
  data,
  mapping = aes(),
  ...,
  filling = TRUE,
  set_context = TRUE,
  order = NULL,
  name = NULL
)

Arguments

data

A numeric or character vector, a data frame, and any other data which can be converted into a matrix. Simple vector will be converted into a one column matrix.

mapping

Default list of aesthetic mappings to use for plot. If NULL, will using aes(.data$.x, .data$.y).

...

Additional arguments passed to geom_tile. Only used when filling = TRUE.

filling

A boolean value indicates whether to fill the heatmap. If you want to custom the filling style, you can set to FALSE.

set_context

A single boolean value indicates whether to set the active context to current plot. If TRUE, all subsequent ggplot elements will be added into this plot.

order

An single integer for the layout order.

name

A string of the plot name. Used to switch the active context in hmanno() or stack_active().

Value

A HeatmapLayout object.

ggplot2 specification

The data input in ggheatmap will be converted into the long formated data frame when drawing. The default mapping will use aes(.data$.x, .data$.y), you can use mapping argument to control it. The data in the underlying ggplot object contains following columns:

• .xpanel and .ypanel: the column and row panel

• .x and .y: the x and y coordinates

• .row_names and .column_names: A factor of the row and column names of the original matrix (only applicable when names exist).

• .row_index and .column_index: the row and column index of the original matrix.

• value: the actual matrix value.

Examples

ggheatmap(1:10)

ggheatmap(letters)